Skip to main content
See every side of every news story

Science Study Finds Two Unknown Archaic Human Lineages in Modern DNA

Berkeley, US

Nathalia Angarita/Reuters

Nathalia Angarita/Reuters

What Happened

UC Berkeley researchers used TRACE to find DNA from two previously unknown archaic hominin lineages in modern human genomes, the Science paper reports. One 'ghost' lineage contributes ~0.5–1% per person worldwide, and a super‑archaic signal appears in Oceanians via Denisovan ancestry, implying pre–out‑of‑Africa interbreeding.

Key Implications

UC Berkeley says the newly identified segments are concentrated in immunity and metabolic regions, and that archaic contributions may have supplied additional variation for natural selection. The university also says TRACE can recover such history from present-day genomes alone, without ancient DNA.

What Happened

UC Berkeley researchers used TRACE to find DNA from two previously unknown archaic hominin lineages in modern human genomes, the Science paper reports. One 'ghost' lineage contributes ~0.5–1% per person worldwide, and a super‑archaic signal appears in Oceanians via Denisovan ancestry, implying pre–out‑of‑Africa interbreeding.

Key Implications

UC Berkeley says the newly identified segments are concentrated in immunity and metabolic regions, and that archaic contributions may have supplied additional variation for natural selection. The university also says TRACE can recover such history from present-day genomes alone, without ancient DNA.

Where Sources Agree

  • arrows_inputGhost Lineage Discovery: Most coverage confirms that researchers developed a new method called TRACE to identify unknown 'ghost' lineages in modern humans, with the technique analyzing 503 contemporary genomes to reconstruct genealogical relationships without requiring ancient DNA samples, according to study authors.
  • arrows_inputGhost Ancestry Identified: Most sources align on the presence of ghost ancestry in all modern human genomes, which constitutes 0.5% to 1% of our genetic makeup and diverged from our lineage approximately 800,000 years ago, according to genomic research findings.

Where Sources Disagree

  • arrows_outputArchaic Admixture vs. Population Structure: Researchers using genealogical modeling argue that 'ghost lineages'—unknown archaic ancestors—contributed DNA to all modern humans, explaining our genetic diversity. However, other anthropological geneticists contend that models emphasizing complex ancestral population structure better account for this diversity without requiring contributions from unknown archaic species.
  • arrows_outputGhost Lineage Divergence Timeline: Some researchers estimate the ghost lineage diverged from modern human ancestors approximately 800,000 years ago. In contrast, other reporting describes the split as occurring more than 500,000 years ago, placing it in the timeframe when Neanderthals and Denisovans diverged.

Timeline

July 30, 2026

Implications for Fossils and Function: Authors note only 1–4% of genetic differentiation among living human populations traces to ancestral stem variation, suggesting early stems were similar in appearance and complicating fossil interpretation; archaic segments are enriched in immune and metabolic regions and even appear near FOXP2, a gene linked to speech. The findings reshape how genetic and fossil evidence are reconciled and point to continued need for computational methods and rare fossil DNA to refine understanding.

July 30, 2026

Ghost and Super‑Archaic Lineages Identified: The study found a 'ghost' lineage present in all modern populations contributing about 0.5–1% of individual genomes and inferred it diverged roughly 800,000 years ago; it also detected a 'super‑archaic' lineage that split ~1.8 million years ago and appears in Oceanians via Denisovan-mediated gene flow (super‑archaic DNA averaging ~0.002% in tested Oceanian genomes). Overall, archaic contributions account for ~2% of non‑African genomes.

July 30, 2026

Science Paper Introduces TRACE: On July 30, 2026, Zhang, Biddanda, Moorjani and colleagues published a Science study introducing TRACE, a method that reconstructs ancestral recombination graphs from modern genomes and mapped genomic regions inherited from previously unknown hominin lineages. Using over 500 contemporary genomes, the team located archaic ancestry segments without requiring ancient DNA.

Summaries by Ground AI

Sources

See All 15
View All Sources

Similar News Topics

DNA icon

DNA

Science icon

Science

News
Feed Dots Icon
For You
Search Icon
Search
Blindspot LogoBlindspotLocal